Search results

Publication date Communities Collections Article title Author(s) Journal/Conference
27 Apr 2026 BMRC Genome Institute of Singapore Telomere-to-telomere assembly using HERRO-corrected Nanopore Simplex reads (Pending publish) Dominik Stanojevic, Dehui Lin, Sergey Nurk, Paola Florez De Sessions, Mile Sikic Nature
13 Mar 2025 BMRC Genome Institute of Singapore A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines Ying Chen, Nadia M. Davidson, Yuk Kei Wan, Fei Yao, Yan Su, Hasindu Gamaarachchi, Andre Sim, Harshil Patel, Hwee Meng Low, Christopher Hendra, Laura Wratten, Christopher Hakkaart, Chelsea Sawyer, Viktoriia Iakovleva, Puay Leng Lee, Lixia Xin, Hui En Vanessa Ng, Jia Min Loo, Xuewen Ong, Hui Qi Amanda Ng, Jiaxu Wang, Wei Qian Casslynn Koh, Suk Yeah Polly Poon, Dominik Stanojevic, Hoang-Dai Tran, Kok Hao Edwin Lim, Shen Yon Toh, Philip Andrew Ewels, Huck-Hui Ng, N. Gopalakrishna Iyer, Alexandre Thiery, Wee Joo Chng, Leilei Chen, Ramanuj DasGupta, Mile Sikic, Yun-Shen Chan, Boon Ooi Patrick Tan, Yue Wan, Wai Leong Tam, Qiang Yu, Chiea Chuan Khor, Torsten Wüstefeld, Alexander Lezhava, Ploy N. Pratanwanich, Michael I. Love, Wee Siong Sho Goh, Sarah B. Ng, Alicia Oshlack, , N. Gopalakrishna Iyer, Qiang Yu, Jonathan Göke Nature Methods
29 Jul 2019 BMRC Genome Institute of Singapore Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes Denis Bertrand, Jim Shaw, Manesh Kalathiyappan, Amanda Hui Qi Ng, M. Senthil Kumar, Chenhao Li, Mirta Dvornicic, Janja Paliska Soldo, Jia Yu Koh, Chengxuan Tong, Oon Tek Ng, Timothy Barkham, Barnaby Young, Kalisvar Marimuthu, Kern Rei Chng, Mile Sikic, Niranjan Nagarajan Nature Biotechnology
31 Jan 2017 BMRC Bioinformatics Institute Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance Martin Šošić, Mile Sikic Bioinformatics
1 Sep 2016 BMRC Bioinformatics Institute SWORD—a highly efficient protein database search Robert Vaser, Dario Pavlović, Mile Sikic Bioinformatics
9 May 2016 BMRC Bioinformatics Institute Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads Ivan Sović, Krešimir Križanović, Karolj Skala, Mile Sikic Bioinformatics
15 Apr 2016 BMRC Bioinformatics Institute Fast and sensitive mapping of nanopore sequencing reads with GraphMap Ivan Sović, Mile Sikic, Andreas Wilm, Shannon Nicole Fenlon, Swaine Chen, Niranjan Nagarajan Nature Communications
23 Nov 2013 BMRC Bioinformatics Institute ExoLocator—an online view into genetic makeup of vertebrate proteins Aik Aun Khoo, Mario Orgrizek-Tomas, Ana Bulovic, Matija Korpar, Ece Gurler, Ivan Slijepcevic, Mile Sikic, Ivana Mihalek Nucleic Acids Research
28 Oct 2013 BMRC Bioinformatics Institute Epidemic centrality – is there an underestimated epidemic impact of network peripheral nodes? Mile Sikic, Alen Lancic, Nino Antulov-Fantulin, Hrvoje Stefancic The European Physical Journal B