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12 Jun 2023
BMRC
Genome Institute of Singapore
Context-aware transcript quantification from long-read RNA-seq data with Bambu
Ying Chen,
Andre Sim,
Yuk Kei Wan,
Keith Yeo,
Joseph Jing Xian Lee,
Min Hao Ling,
Michael I. Love,
Jonathan Göke
Nature Methods
23 Sep 2021
BMRC
Genome Institute of Singapore
Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
Laura Wratten,
Andreas Wilm,
Jonathan Göke
Nature Methods
25 Aug 2021
BMRC
Institute of Molecular and Cell Biology
Epigenetic promoter alterations in GI tumour immune-editing and resistance to immune checkpoint inhibition
Raghav Sundar,
Kie-Kyon Huang,
Vikrant Kumar,
Kalpana Ramnarayanan,
Deniz Demircioğlu,
Zhisheng Her,
Xuewen Ong,
Zul Fazreen Bin Adam Isa,
Manjie Xing,
Angie Lay-Keng Tan,
David Wai Meng Tai,
Su Pin Choo,
Weiwei Zhai,
Jia Qi Lim,
Meghna Das Thakur,
Luciana Molinero,
Edward Cha,
Marcella Fasso,
Monica Niger,
Filippo Pietrantonio,
Jeeyun Lee,
Anand D Jeyasekharan,
Aditi Qamra,
Radhika Patnala,
Arne Fabritius,
Mark De Simone,
Joe Yeong,
Cedric Chuan Young Ng,
Sun Young Rha,
Yukiya Narita,
Kei Muro,
Yu Amanda Guo,
Anders Jacobsen Skanderup,
Jimmy Bok Yan So,
Wei Peng Yong,
Qingfeng Chen,
Jonathan Göke,
Patrick Tan
Gut
19 Jul 2021
BMRC
Genome Institute of Singapore
Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore
Ploy N. Pratanwanich,
Fei Yao,
Ying Chen,
Casslynn W. Q. Koh,
Yuk Kei Wan,
Christopher Hendra,
Polly Poon,
Yeek Teck Goh,
Phoebe M. L. Yap,
Jing Yuan Chooi,
Wee Joo Chng,
Sarah B. Ng,
Alexandre Thiery,
W. S. Sho Goh,
Jonathan Göke
Nature Biotechnology
5 Sep 2019
BMRC
Genome Institute of Singapore
A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters
Deniz Demircioğlu,
Engin Cukuroglu,
Martin Kindermans,
Tannistha Nandi,
Claudia Calabrese,
Nuno A. Fonseca,
André Kahles,
Kjong-Van Lehmann,
Oliver Stegle,
Alvis Brazma,
Angela N. Brooks,
Gunnar Rätsch,
Patrick Tan,
Jonathan Göke
Cell
19 Jun 2018
BMRC
Bioinformatics Institute
SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements
Dang Vinh Do,
Bernhard Strauss,
Engin Cukuroglu,
Iain Macaulay,
Keng Boon Wee,
Tim Xiaoming Hu,
Ruiz De Los Mozos Igor,
Caroline Lee,
Andrew Harrison,
Richard Butler,
Sabine Dietmann,
Ule Jernej,
John Marioni,
Christopher W. J. Smith,
Jonathan Göke,
M. Azim Surani
Cell Discovery
5 Jun 2014
BMRC
Institute of Molecular and Cell Biology
Klf2 Is an Essential Factor that Sustains Ground State Pluripotency
Jia-Chi Yeo,
Jianming Jiang,
Zi-Ying Tan,
Guo-Rong Yim,
Jia-Hui Ng,
Jonathan Göke,
Petra Kraus,
Hongqing Liang,
Kevin Andrew Uy Gonzales,
Han-Chung Chong,
Cheng-Peow Tan,
Yee-Siang Lim,
Nguan-Soon Tan,
Thomas Lufkin,
Huck-Hui Ng
Cell Stem Cell
8 Sep 2013
BMRC
Genome Institute of Singapore
SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells
Xinyi Lu,
Jonathan Göke,
Friedrich Sachs,
Pierre-Étienne Jacques,
Hongqing Liang,
Bo Feng,
Guillaume Bourque,
Paula A. Bubulya,
Huck-Hui Ng
Nature Cell Biology
24 Mar 2013
BMRC
Genome Institute of Singapore
A PRC2-Dependent Repressive Role of PRDM14 in Human Embryonic Stem Cells and Induced Pluripotent Stem Cell Reprogramming
Yun-Shen Chan,
Jonathan Göke,
Xinyi Lu,
Nandini Venkatesan,
Bo Feng,
I-Hsin Su,
Huck-Hui Ng
STEM CELLS
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