Bioinformatics Institute

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Publication date Article title Author(s)
15 Feb 2024 Coarse-Grained Model of Glycosaminoglycans for Biomolecular Simulations Aishwary T. Shivgan, Jan K. Marzinek, Alexander Krah, Paul Matsudaira, Chandra S. Verma, Peter J. Bond
23 Dec 2023 Mechanisms of allostery at the viral surface through the eyes of molecular simulation Firdaus Samsudin, Lorena Zuzic, Jan K. Marzinek, Peter J. Bond
8 Dec 2023 Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion Ingrid Guilvout, Firdaus Samsudin, Roland G. Huber, Peter J. Bond, Benjamin Bardiaux, Olivera Francetic
20 Nov 2023 Variations of the Mycobacterium abscessus F-ATP synthase subunit a-c interface alter binding and potency of the anti-TB drug bedaquiline Alexander Krah, Priya Ragunathan, Peter J. Bond, Gerhard Gruber
1 Nov 2023 Defining neutralization and allostery by antibodies against COVID-19 variants Nikhil Kumar Tulsian, Raghuvamsi Venkata Palur, Xinlei Qian, Yue Gu, Bhuvaneshwari D/O Shunmuganathan, Firdaus Samsudin, Yee Hwa Wong, Jianqing Lin, Kiren Purushotorman, Mary McQueen Kozma, Bei Wang, Julien Lescar, Cheng-I Wang, Ravindra Kumar Gupta, Peter John Bond, Paul Anthony MacAry
11 Oct 2023 Stitched peptides as potential cell permeable inhibitors of oncogenic DAXX protein Clare Jelinska, Srinivasaraghavan Kannan, Yuri Frosi, Siti Radhiah Ramlan, Fernaldo Winnerdy, Rajamani Lakshminarayanan, Charles W Johannes, Christopher J Brown, Anh-Tuan Phan, Daniela Rhodes, Chandra S Verma
6 Oct 2023 Shape complementarity processes for ultrashort-burst sensitive M13–PEG–WS2-powered MCF-7 cancer cell sensors Maria P. Meivita, Shao-Xiang Go, Fitya S. Mozar, Lunna Li, Yaw Sing Tan, Natasa Bajalovic, Desmond K. Loke
29 Sep 2023 Targeting Toll-like receptor-driven systemic inflammation by engineering an innate structural fold into drugs Ganna Petruk, Manoj Puthia, Firdaus Samsudin, Jitka Petrlova, Franziska Olm, Margareta Mittendorfer, Snejana Hyllén, Dag Edström, Ann-Charlotte Strömdahl, Carl Diehl, Simon Ekström, Björn Walse, Sven Kjellstrom, Peter J. Bond, Sandra Lindstedt, Artur Schmidtchen
14 Sep 2023 Elucidating the Effect of Polyethylene Terephthalate Chain Structure on Its Enzymatic Degradation Behavior Jean-Baptiste Lena, Rui A. Gonçalves, Sharad Kharel, Srinivasaraghavan Kannan, Chandra S. Verma, Keerthi Mohan Pinchi, Sierin Lim, Yeng Ming Lam
13 Sep 2023 The First Quarter Century of the Dense Alignment Surface Transmembrane Prediction Method Miklós Cserző, Birgit Eisenhaber, Frank Eisenhaber, Csaba Magyar, István Simon