Bioinformatics Institute

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Publication date Article title Author(s)
18 Feb 2025 Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment Mai Chan Lau, Jennifer Borowsky, Juha P. Väyrynen, Koichiro Haruki, Melissa Zhao, Andressa Dias Costa, Simeng Gu, Annacarolina da Silva, Tomotaka Ugai, Kota Arima, Minh N. Nguyen, Yasutoshi Takashima, Joe Yeong, David Tai, Tsuyoshi Hamada, Jochen K. Lennerz, Charles S. Fuchs, Catherine J. Wu, Jeffrey A. Meyerhardt, Shuji Ogino, Jonathan A. Nowak
12 Feb 2025 Enhancing Niacinamide Skin Penetration via Other Skin Brightening Agents: A Molecular Dynamics Simulation Study Kamolrat Somboon, Choon-Peng Chng, Changjin Huang, Shikhar Gupta
1 Oct 2024 Systems biology approach for enhancing limonene yield by re-engineering Escherichia coli Jasmeet Kaur Khanijou, Yan Ting Hee, Clement P. M. Scipion, Xixian Chen, Kumar Selvarajoo
15 Feb 2024 Coarse-Grained Model of Glycosaminoglycans for Biomolecular Simulations Aishwary T. Shivgan, Jan K. Marzinek, Alexander Krah, Paul Matsudaira, Chandra S. Verma, Peter J. Bond
23 Dec 2023 Mechanisms of allostery at the viral surface through the eyes of molecular simulation Firdaus Samsudin, Lorena Zuzic, Jan K. Marzinek, Peter J. Bond
8 Dec 2023 Identifying Key In Silico Knockout for Enhancement of Limonene Yield Through Dynamic Metabolic Modelling Jasmeet Kaur Khanijou, Yan Ting Hee, Kumar Selvarajoo
8 Dec 2023 Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion Ingrid Guilvout, Firdaus Samsudin, Roland G. Huber, Peter J. Bond, Benjamin Bardiaux, Olivera Francetic
20 Nov 2023 Variations of the Mycobacterium abscessus F-ATP synthase subunit a-c interface alter binding and potency of the anti-TB drug bedaquiline Alexander Krah, Priya Ragunathan, Peter J. Bond, Gerhard Gruber
1 Nov 2023 Defining neutralization and allostery by antibodies against COVID-19 variants Nikhil Kumar Tulsian, Raghuvamsi Venkata Palur, Xinlei Qian, Yue Gu, Bhuvaneshwari D/O Shunmuganathan, Firdaus Samsudin, Yee Hwa Wong, Jianqing Lin, Kiren Purushotorman, Mary McQueen Kozma, Bei Wang, Julien Lescar, Cheng-I Wang, Ravindra Kumar Gupta, Peter John Bond, Paul Anthony MacAry
11 Oct 2023 Stitched peptides as potential cell permeable inhibitors of oncogenic DAXX protein Clare Jelinska, Srinivasaraghavan Kannan, Yuri Frosi, Siti Radhiah Ramlan, Fernaldo Winnerdy, Rajamani Lakshminarayanan, Charles W Johannes, Christopher J Brown, Anh-Tuan Phan, Daniela Rhodes, Chandra S Verma