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Publication date Communities Collections Article title Author(s) Journal/Conference
28 Aug 2025 BMRC Genome Institute of Singapore Skin metatranscriptomics reveals a landscape of variation in microbial activity and gene expression across the human body Minghao Chia, Amanda Hui Qi Ng, Aarthi Ravikrishnan, Ahmad Nazri Mohamed Naim, Stephen Wearne, John Common, Niranjan Nagarajan Nature Biotechnology
30 Jul 2025 BMRC Genome Institute of Singapore Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning Mauricio Perez, Michiko Kimoto, Priscilla Rajakumar, Chayaporn Suphavilai, Rafael Peres da Silva, Hui Pen Tan, Nicholas Ting Xun Ong, Hannah Nicholas, Ichiro Hirao, Wei Leong Chew, Niranjan Nagarajan Nature Communications
13 Jan 2025 BMRC A*STAR Skin Research Labs Life stage impact on the human skin ecosystem: lipids and the microbial community Martin P. Pagac, Bala Davient, Luca Antonio Plado, Hilbert Yuen In Lam, Shi Mun Lee, Aarthi Ravikrishnan, Wee Ling Esther Chua, Sneha Muralidharan, Aishwarya Sridharan, Antony S. Irudayaswamy, Ramasamy Srinivas, Stephen Wearne, Ahmad Nazri Mohamed Naim, Eliza Xin Pei Ho, H. Q. Amanda Ng, Junmei Samantha Kwah, Eileen Png, Anne K. Bendt, Markus R. Wenk, Federico Torta, Niranjan Nagarajan, John Common, Yap Seng Chong, Elizabeth Huiwen Tham, Lynette Pei-chi Shek, Evelyn Xiu Ling Loo, John Chambers, Yik Weng Yew, Marie Loh, Thomas L. Dawson npj Biofilms and Microbiomes
28 Jun 2024 BMRC Genome Institute of Singapore Floria: fast and accurate strain haplotyping in metagenomes Jim Shaw, Jean-Sebastien Gounot, Hanrong Chen, Niranjan Nagarajan, Yun William Yu Bioinformatics
3 Feb 2024 BMRC Skin Research Lab The skin microbiome in pediatric atopic dermatitis and food allergy Elizabeth Huiwen Tham, Minghao Chia, Carmen Riggioni, Niranjan Nagarajan, John E. A. Common, Heidi H. Kong Allergy
5 Jan 2023 BMRC Genome Institute of Singapore Profiling Microbial Communities in Idiopathic Granulomatous Mastitis Seeu Si Ong, Jia Xu, Choon Kiat Sim, Alexis Jiaying Khng, Peh Joo Ho, Philip Kam Weng Kwan, Aarthi Ravikrishnan, Kiat-Tee Benita Tan, Qing Ting Tan, Ern Yu Tan, Su-Ming Tan, Thomas Choudary Putti, Swee Ho Lim, Ee Ling Serene Tang, Niranjan Nagarajan, Neerja Karnani, Jingmei Li, Mikael Hartman International Journal of Molecular Sciences
13 Oct 2022 BMRC Genome Institute of Singapore Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians Jean-Sebastien Gounot, Minghao Chia, Denis Bertrand, Woei-Yuh Saw, Aarthi Ravikrishnan, Adrian Low, Yichen Ding, Amanda Hui Qi Ng, Linda Wei Lin Tan, Yik-Ying Teo, Henning Seedorf, Niranjan Nagarajan Nature Communications
19 Mar 2022 BMRC Skin Research Lab Shared signatures and divergence in skin microbiomes of children with atopic dermatitis and their caregivers Minghao Chia, Ahmad N.M. Naim, Angeline S.L. Tay, Karmun Lim, Kean Lee Chew, See Jie Yow, John Chen, John E.A. Common, Niranjan Nagarajan, Elizabeth Huiwen Tham Journal of Allergy and Clinical Immunology
8 Oct 2020 BMRC Skin Research Lab Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity Angeline S.L. Tay, Chenhao Li, Tannistha Nandi, Kern Rei Chng, Anand Kumar Andiappan, Vijaya Saradhi Mettu, Camille de Cevins, Aarthi Ravikrishnan, Charles-Antoine Dutertre, X.F. Colin C. Wong, Amanda Hui Qi Ng, Sri Anusha Matta, Florent Ginhoux, Olaf Rotzschke, Fook Tim Chew, Mark B.Y. Tang, Yik Weng Yew, Niranjan Nagarajan, John E.A. Common Journal of Allergy and Clinical Immunology
22 Aug 2019 BMRC Genome Institute of Singapore An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data Chenhao Li, Kern Rei Chng, Junmei Samantha Kwah, Tamar V. Av-Shalom, Lisa Tucker-Kellogg, Niranjan Nagarajan Microbiome