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Publication date Communities Collections Article title Author(s) Journal/Conference
22 Aug 2019 BMRC Genome Institute of Singapore An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data Chenhao Li, Kern Rei Chng, Junmei Samantha Kwah, Tamar V. Av-Shalom, Lisa Tucker-Kellogg, Niranjan Nagarajan Microbiome
19 Aug 2019 BMRC Bioinformatics Institute Development and application of a transcriptional sensor for detection of heterologous acrylic acid production in E. coli Sarada S. Raghavan, Sharon Chee, Juntao Li, Jeremie Poschmann, Niranjan Nagarajan, Siau Jia Wei, Chandra S. Verma, Farid Ghadessy Microbial Cell Factories
29 Jul 2019 BMRC Genome Institute of Singapore Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes Denis Bertrand, Jim Shaw, Manesh Kalathiyappan, Amanda Hui Qi Ng, M. Senthil Kumar, Chenhao Li, Mirta Dvornicic, Janja Paliska Soldo, Jia Yu Koh, Chengxuan Tong, Oon Tek Ng, Timothy Barkham, Barnaby Young, Kalisvar Marimuthu, Kern Rei Chng, Mile Sikic, Niranjan Nagarajan Nature Biotechnology
29 Mar 2019 BMRC Bioinformatics Institute Structure mapping of dengue and Zika viruses reveals functional long-range interactions Roland G. Huber, Xin Ni Lim, Wy Ching Ng, Adelene Y. L. Sim, Hui Xian Poh, Yang Shen, Su Ying Lim, Karin B. Sundstrom, Xuyang Sun, Jong Ghut Aw, Horng Khit Too, Peng Hee Boey, Andreas Wilm, Tanu Chawla, Milly M. Choy, Lu Jiang, Paola Florez De Sessions, Xian Jun Loh, Sylvie Alonso, Martin Hibberd, Niranjan Nagarajan, Eng Eong Ooi, Peter J. Bond, October M. Sessions, Wan Yue Nature Communications
27 Jul 2018 BMRC Institute of Molecular and Cell Biology Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study Micheál Mac Aogáin, Ravishankar Chandrasekaran, Albert Yick Hou Lim, Teck Boon Low, Gan Liang Tan, Tidi Hassan, Thun How Ong, Amanda Hui Qi Ng, Denis Bertrand, Jia Yu Koh, Sze Lei Pang, Zi Yang Lee, Xiao Wei Gwee, Christopher Martinus, Yang Yie Sio, Sri Anusha Matta, Fook Tim Chew, Holly R. Keir, John E. Connolly, John Arputhan Abisheganaden, Mariko Siyue Koh, Niranjan Nagarajan, James D. Chalmers, Sanjay H. Chotirmall European Respiratory Journal
27 Oct 2017 BMRC Institute of Molecular and Cell Biology Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history Yuan O. Zhu, Pauline P. K. Aw, Paola Florez De Sessions, Shuzhen Hong, Lee Xian See, Lewis Z. Hong, Andreas Wilm, Chen Hao Li, Stephane Hue, Seng Gee Lim, Niranjan Nagarajan, William F. Burkholder, Martin Hibberd BMC Genomics
9 Oct 2017 BMRC Institute of Molecular and Cell Biology The draft genome of tropical fruit durian (Durio zibethinus) Bin Tean Teh, Kevin Lim, Chern Han Yong, Cedric Chuan Young Ng, Sushma Ramesh Rao, Vikneswari Rajasegaran, Weng Khong Lim, Choon Kiat Ong, Ki Chan, Vincent Kin Yuen Cheng, Poh Sheng Soh, Sanjay Swarup, Steven G Rozen, Niranjan Nagarajan, Patrick Tan Nature Genetics
12 May 2016 BMRC Bioinformatics Institute In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation Jong Ghut Ashley Aw, Yang Shen, Andreas Wilm, Miao Sun, Xin Ni Lim, Kum-Loong Boon, Sidika Tapsin, Yun-Shen Chan, Cheng-Peow Tan, Adelene Y.L. Sim, Tong Zhang, Teodorus Theo Susanto, Zhiyan Fu, Niranjan Nagarajan, Yue Wan Molecular Cell
15 Apr 2016 BMRC Bioinformatics Institute Fast and sensitive mapping of nanopore sequencing reads with GraphMap Ivan Sović, Mile Sikic, Andreas Wilm, Shannon Nicole Fenlon, Swaine Chen, Niranjan Nagarajan Nature Communications
13 Dec 2012 BMRC Genome Institute of Singapore Whole-genome reconstruction and mutational signatures in gastric cancer Niranjan Nagarajan, Denis Bertrand, Axel M Hillmer, Zhi Jiang Zang, Fei Yao, Pierre-Étienne Jacques, Audrey SM Teo, Ioana Cutcutache, Zhenshui Zhang, Wah Heng Lee, Yee Yen Sia, Song Gao, Pramila N Ariyaratne, Andrea Ho, Xing Yi Woo, Lavanya Veeravali, Choon Kiat Ong, Niantao Deng, Kartiki V Desai, Chiea Chuen Khor, Martin L Hibberd, Atif Shahab, Yijun Ruan, Jaideepraj Rao, Mengchu Wu, Ming Teh, Feng Zhu, Sze Yung Chin, Brendan Pang, Jimmy BY So, Guillaume Bourque, Richie Soong, Wing-Kin Sung, Bin Tean Teh, Steven Rozen, Xiaoan Ruan, Khay Guan Yeoh, Patrick BO Tan Genome Biology
25 Nov 2012 BMRC Genome Institute of Singapore The draft genome of sweet orange (Citrus sinensis) Qiang Xu, Ling-Ling Chen, Xiaoan Ruan, Dijun Chen, Andan Zhu, Chunli Chen, Denis Bertrand, Wen-Biao Jiao, Bao-Hai Hao, Matthew P Lyon, Jiongjiong Chen, Song Gao, Feng Xing, Hong Lan, Ji-Wei Chang, Xianhong Ge, Yang Lei, Qun Hu, Yin Miao, Lun Wang, Shixin Xiao, Manosh Kumar Biswas, Wenfang Zeng, Fei Guo, Hongbo Cao, Xiaoming Yang, Xi-Wen Xu, Yun-Jiang Cheng, Juan Xu, Ji-Hong Liu, Oscar Junhong Luo, Zhonghui Tang, Wen-Wu Guo, Hanhui Kuang, Hong-Yu Zhang, Mikeal L Roose, Niranjan Nagarajan, Xiu-Xin Deng, Yijun Ruan Nature Genetics
19 Sep 2011 BMRC Genome Institute of Singapore Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences Song Gao, Wing-Kin Sung, Niranjan Nagarajan Journal of Computational Biology