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Publication date Communities Collections Article title Author(s) Journal/Conference
10 Feb 2026 BMRC Bioinformatics Institute Lethal effects of ivermectin structures on malaria vectors and in silico analysis of interactions with their glutamate-gated chloride ion channels Minh N. Nguyen, Andrew K. Jones, David Hotwagner, Pattarapon Khemrattrakool, Thitipong Hongsuwong, Borimas Hanboonkunupakarn, Podjanee Jittamala, Patchara Sriwichai, Joel Tarning, Kevin C. Kobylinski Scientific Reports
20 Oct 2025 BMRC Bioinformatics Institute Fish isoallergens and variants: database compilation, in silico allergenicity prediction challenges, and epitope-based threshold optimization (Pending publish) Vachiranee Limviphuvadh, Thimo Ruethers, Minh N. Nguyen, Dean R. Jerry, Benjamin P. C. Smith, Yulan Wang, Yansong Miao, Anand Kumar Andiappan, Andreas L. Lopata, Sebastian Maurer-Stroh Frontiers in Bioinformatics
18 Feb 2025 BMRC Bioinformatics Institute Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment Mai Chan Lau, Jennifer Borowsky, Juha P. Väyrynen, Koichiro Haruki, Melissa Zhao, Andressa Dias Costa, Simeng Gu, Annacarolina da Silva, Tomotaka Ugai, Kota Arima, Minh N. Nguyen, Yasutoshi Takashima, Joe Yeong, David Tai, Tsuyoshi Hamada, Jochen K. Lennerz, Charles S. Fuchs, Catherine J. Wu, Jeffrey A. Meyerhardt, Shuji Ogino, Jonathan A. Nowak PLOS Computational Biology
31 Jan 2024 BMRC Bioinformatics Institute Identification and semi-quantification of protein allergens in complex mixtures using proteomic and AllerCatPro 2.0 bioinformatic analyses: a proof-of-concept investigation Nora L. Krutz, Ian Kimber, Jason Winget, Minh N. Nguyen, Vachiranee Limviphuvadh, Sebastian Maurer-Stroh, Catherine Mahony, G. Frank Gerberick Journal of Immunotoxicology
11 Jul 2023 BMRC Bioinformatics Institute Application of AllerCatPro 2.0 for protein safety assessments of consumer products Nora L. Krutz, Ian Kimber, Jason Winget, Minh N. Nguyen, Vachiranee Limviphuvadh, Sebastian Maurer-Stroh, Catherine Mahony, G. Frank Gerberick Frontiers in Allergy
29 May 2019 BMRC Bioinformatics Institute Characterization of Hydration Properties in Structural Ensembles of Biomolecules Mohan R. Pradhan, Minh N. Nguyen, Srinivasaraghavan Kannan, Stephen J. Fox, Chee Keong Kwoh, David P. Lane, Chandra S. Verma Journal of Chemical Information and Modeling
9 May 2019 BMRC Bioinformatics Institute AppA: a web server for analysis, comparison, and visualization of contact residues and interfacial waters of antibody–antigen structures and models Minh N. Nguyen, Chandra S. Verma, Pingyu Zhong Nucleic Acids Research
22 Feb 2019 BMRC Bioinformatics Institute Discovering Putative Protein Targets of Small Molecules: A Study of the p53 Activator Nutlin Minh N. Nguyen, Neeladri Sen, Meiyin LIn, Thomas Leonard Joseph, Candida Vaz, Vivek Tanavde, Luke Way, Ted Hupp, Chandra S. Verma, M. S. Madhusudhan Journal of Chemical Information and Modeling
18 Jan 2019 BMRC Bioinformatics Institute AllerCatPro - Prediction of protein allergenicity potential from the protein sequence Sebastian Maurer-Stroh, Nora L. Krutz, Petra S. Kern, Vithiagaran Gunalan, Minh N. Nguyen, Vachiranee Limviphuvadh, Frank Eisenhaber, G. Frank Gerberick Bioinformatics
15 Jan 2019 BMRC Bioinformatics Institute Simulations of mutant p53 DNA binding domains reveal a novel druggable pocket Mohan R. Pradhan, Jia Wei Siau, Srinivasaraghavan Kannan, Minh N. Nguyen, Zohra Ouaray, Chee Keong Kwoh, David P. Lane, Farid Ghadessy, Chandra S. Verma Nucleic Acids Research