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30 Apr 2026
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BMRC
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Bioinformatics Institute
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Direct contact between iPSC-derived macrophages and hepatocytes drives reciprocal acquisition of Kupffer cell identity and hepatocyte maturation (Pending publish)
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Christopher Zhe Wei Lee,
Farah Tasnim,
Xiaozhong Huang,
Raman Sethi,
Yoohyun Song,
Tatsuya Kozaki,
Sebastiaan De Schepper,
Nicholas Ang,
Ivy Low,
You Yi Hwang,
Jinmiao Chen,
Hanry Yu,
Florent Ginhoux
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eLife Sciences Publications
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10 Mar 2026
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BMRC
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Institute of Molecular and Cell Biology
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Spatial cartography of human thymus enables the geopositioning of lineage transcription factors in rare mimetic thymic epithelial cells
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Uma S. Kamaraj,
Ying Chen,
Junjie Lei,
Pradeep Gautam,
Pongsatorn Horcharoensuk,
Czaryna K. M. Clemente,
Katja G. Weinacht,
Nicholas R. J. Gascoigne,
Jinmiao Chen,
Ching Kit Chen,
Qingfeng Chen,
Qi-Jing Li,
Lai Guan Ng,
Yuin-Han Loh
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Nature Communications
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28 Aug 2025
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BMRC
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A*STAR Skin Research Labs
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Septal LYVE1+ macrophages control adipocyte stem cell adipogenic potential (Pending publish)
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Xiaotong Yu,
Yanan Hu,
Hwee Ying Lim,
Ziyi Li,
Diego Adhemar Jaitin,
Katharine Yang,
Wan Ting Kong,
Jiaqian Xu,
David Alejandro Bejarano,
Mathilde Bied,
Lucie Orliaguet,
Gowshika Rengasamy,
Zachary Chow,
Christopher Zhe Wei Lee,
Josephine Lum,
Jing Tian,
Xiao-Meng Zhang,
Honghao Liu,
Shu Wen Tan,
Jinmiao Chen,
Peter See,
Yuin-Han Loh,
Benoit Malleret,
Sonia Baig,
M. Shabeer M. Yassin,
Sue-Anne Ee Shiow Toh,
Bernard Malissen,
Xiujun Fu,
Kenji Kabashima,
Lai Guan Ng,
Camille Bleriot,
Zhaoyuan Liu,
Lingling Sheng,
Dan-Ning Zheng,
Junwen Qu,
Nicolas Venteclef,
Bing Su,
Ido Amit,
Andreas Schlitzer,
Véronique Angeli,
Florent Ginhoux,
Svetoslav Chakarov
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Science
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18 Aug 2025
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BMRC
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Bioinformatics Institute
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Single-nucleus transcriptomics reveals a distinct microglial state and increased MSR1-mediated phagocytosis as common features across dementia subtypes (Pending publish)
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Sook-Yoong Chia,
Mengwei Li,
Zhihong Li,
Haitao Tu,
Jolene Wei Ling Lee,
Lifeng Qiu,
Jingjing Ling,
Richard Reynolds,
Salvatore Albani,
Eng-King Tan,
Adeline Su Lyn Ng,
Jinmiao Chen,
Li Zeng
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Genome Medicine
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4 Aug 2025
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BMRC
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Bioinformatics Institute
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ACE: A Versatile Contrastive Learning Framework for Single-cell Mosaic Integration (Pending publish)
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Xuhua Yan,
Jinmiao Chen,
Ruiqing Zheng,
Min Li
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Genomics, Proteomics & Bioinformatics
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6 Mar 2025
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BMRC
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Bioinformatics Institute
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Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease (Pending publish)
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Lynn van Olst,
Brooke Simonton,
Alex J. Edwards,
Anne V. Forsyth,
Jake Boles,
Pouya Jamshidi,
Thomas Watson,
Nate Shepard,
Talia Krainc,
Benney MR Argue,
Ziyang Zhang,
Joshua Kuruvilla,
Lily Camp,
Mengwei Li,
Hang Xu,
Jeanette L. Norman,
Joshua Cahan,
Robert Vassar,
Jinmiao Chen,
Rudolph J. Castellani,
James AR Nicoll,
Delphine Boche,
David Gate
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Nature Medicine
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13 Nov 2024
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BMRC
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Bioinformatics Institute
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Rediscovering publicly available single-cell data with the DISCO platform
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Mengwei Li,
Kok Siong Ang,
Brian Teo,
Uddamvathanak Rom,
Minh N Nguyen,
Sebastian Maurer-Stroh,
Jinmiao Chen
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Nucleic Acids Research
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3 Jul 2024
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BMRC
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Bioinformatics Institute
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ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists
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Raman Sethi,
Kok Siong Ang,
Mengwei Li,
Yahui Long,
Jingjing Ling,
Jinmiao Chen
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Nature Communications
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21 Jun 2024
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BMRC
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Bioinformatics Institute
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Deciphering spatial domains from spatial multi-omics with SpatialGlue
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Yahui Long,
Kok Siong Ang,
Raman Sethi,
Sha Liao,
Yang Heng,
Lynn van Olst,
Shuchen Ye,
Chengwei Zhong,
Hang Xu,
Di Zhang,
Immanuel Kwok,
Nazihah Husna,
Min Jian,
Lai Guan Ng,
Ao Chen,
Nicholas R. J. Gascoigne,
David Gate,
Rong Fan,
Xun Xu,
Jinmiao Chen
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Nature Methods
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7 Apr 2024
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BMRC
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A*STAR Infectious Disease Labs
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Single-Cell Transcriptome Profiling of Scale Drop Disease Virus-Infected Asian Seabass (Lates calcarifer)
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Zhixuan Loh,
Ting Wei Lim,
Shanshan Wu Howland,
Sunita Awate,
Laurent Renia,
Jinmiao Chen,
Ee Chee Ren
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Aquaculture Journal
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