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Publication date Communities Collections Article title Author(s) Journal/Conference
15 Mar 2024 BMRC Genome Institute of Singapore Highly sensitive spatial transcriptomics using FISHnCHIPs of multiple co-expressed genes Xinrui Zhou, Wan Yi Seow, Norbert Ha, Teh How Cheng, Lingfan Jiang, Jeeranan Boonruangkan, Jolene Jie Lin Goh, Shyam Prabhakar, Nigel Chou, Kok Hao Chen Nature Communications
27 Feb 2024 BMRC Genome Institute of Singapore BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis Vipul Singhal, Nigel Chou, Joseph Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, Yun-Ching Chang, Erica Mei Ling Teo, Jonathan Aow, Hwee Kuan Lee, Kok Hao Chen, Shyam Prabhakar Nature Genetics
18 Jan 2024 BMRC Infectious Disease Labs Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity Quy Xiao Xuan Lin, Deepa Rajagopalan, Akshamal M. Gamage, Le Min Tan, Prasanna Nori Venkatesh, Wharton O. Y. Chan, Dilip Kumar, Ragini Agrawal, Yao Chen, Siew-Wai Fong, Amit Singh, Louisa J. Sun, Seow-Yen Tan, Louis Yi Ann Chai, Jyoti Somani, Bernett Lee, Laurent Renia, Lisa F P Ng, Kollengode Ramanathan, Lin-Fa Wang, Barnaby Young, David Lye, Amit Singhal, Shyam Prabhakar Nature Communications
19 Jan 2023 BMRC Bioinformatics Institute The Singapore National Precision Medicine Strategy Eleanor Wong, Nicolas Bertin, Maxime Hebrard, Roberto Tirado-Magallanes, Claire Bellis, Weng Khong Lim, Chee Yong Chua, Philomena Mei Lin Tong, Raymond Chua, Kenneth Mak, Tit Meng Lim, Wei Yang Cheong, Kwee Eng Thien, Khean Teik Goh, Jin-Fang Chai, Jimmy Lee, Joseph Jao-Yiu Sung, Tien Yin Wong, Calvin Woon Loong Chin, Peter D. Gluckman, Liuh Ling Goh, Kenneth Hon Kim Ban, Tin Wee Tan, , Rob M. van Dam, Yik Ying Teo, Marie Loh, Paul Eillot, Eng Sing Lee, Joanne Ngeow, Elio Riboli, Rinkoo Dalan, Irfahan Kassam, Lakshmi Narayanan Lakshmanan, Tock Han Lim, Hong Kiat Ng, Theresia Mina, Darwin Tay, Charumathi Sabanayagam, Yih Chung Tham, Tyler Rim, Tin Aung, Miao Ling Chee, Hengtong Li, Miao Li Chee, Khung Keong Yeo, Stuart Alexander Cook, Chee Jian Pua, Chengxi Yang, Yap Seng Chong, Johan Gunnar Eriksson, Kok Hian Tan, Fabian Yap, Chia Wei Lim, Pi Kuang Tsai, Wen Jie Chew, Wey Ching Sim, Li-xian Grace Toh, Clarabelle Bitong Lin, Yee Yen Sia, Tat Hung Koh, Wee Yang Meah, Joanna Hui Juan Tan, Justin Jeyakani, Jack Ow, Shimin Ang, Ashar J. Malik, Dimitar Kenanov, Xueling Sim, Ching-Yu Cheng, Sonia Davila, Neerja Karnani, Khai Pang Leong, Jianjun Liu, Shyam Prabhakar, Sebastian Maurer-Stroh, Chandra Shekhar Verma, Pavitra Krishnaswamy, Rick Siow Mong Goh, Irenaeus Chia, Clarissa Ho, Doreen Low, Suchin Virabhak, Jacklyn Yong, Weiling Zheng, Shih Wee Seow, Yee Kwang Seck, Mingshi Koh, John C. Chambers, E. Shyong Tai, Patrick Tan Nature Genetics
20 Feb 2017 BMRC Skin Research Lab A functional SNP associated with atopic dermatitis controls cell type-specific methylation of the VSTM1 gene locus Dilip Kumar, Kia Joo Puan, Anand Kumar Andiappan, Bernett Lee, Geertje H. A. Westerlaken, Doreen Haase, Rossella Melchiotti, Zhuang Li, Nurhashikin Yusof, Josephine Lum, Geraldine Koh, Shihui Foo, Joe Yeong, Alexessander Couto Alves, Juha Pekkanen, Liang Dan Sun, Astrid Irwanto, Benjamin P. Fairfax, Vivek Naranbhai, John E. A. Common, Mark Tang, Chin Keh Chuang, Marjo-Riitta Jarvelin, Julian C. Knight, Xuejun Zhang, Fook Tim Chew, Shyam Prabhakar, Liu Jianjun, De Yun Wang, Francesca Zolezzi, Michael Poidinger, E. Birgitte Lane, Linde Meyaard, Olaf Rotzschke Genome Medicine
22 Dec 2016 SERC Institute for Infocomm Research A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data Yongli Hu, Takeshi Hase, Hui Peng Lee, Shyam Prabhakar, Hiroaki Kitano, See Kiong Ng, Samik Ghosh, Jin Kiat Lawrence Wee BMC Genomics
21 Sep 2015 BMRC Institute of Molecular and Cell Biology Non-canonical NF-κB signalling and ETS1/2 cooperatively drive C250T mutant TERT promoter activation (Pending publish) Yinghui Li, Qi-Ling Zhou, Wenjie Sun, Prashant Chandrasekharan, Hui Shan Cheng, Zhe Ying, Manikandan Lakshmanan, Anandhkumar Raju, Daniel G. Tenen, Shi-Yuan Cheng, Kai-Hsiang Chuang, Jun LI, Shyam Prabhakar, Mengfeng Li, Vinay Tergaonkar Nature Cell Biology
19 Mar 2014 BMRC Genome Institute of Singapore TACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers Aleksander Jankowski, Shyam Prabhakar, Jerzy Tiuryn BMC Genomics
1 Jan 2014 BMRC Institute of Molecular and Cell Biology Efficient Endoderm Induction from Human Pluripotent Stem Cells by Logically Directing Signals Controlling Lineage Bifurcations Kyle M. Loh, Lay Teng Ang, Jingyao Zhang, Vibhor Kumar, Jasmin Ang, Jun Qiang Auyeong, Kian Leong Lee, Siew Hua Choo, Christina Y.Y. Lim, Massimo Nichane, Junru Tan, Monireh Soroush Noghabi, Lisa Azzola, Elizabeth S. Ng, Jens Durruthy-Durruthy, Vittorio Sebastiano, Lorenz Poellinger, Andrew G. Elefanty, Edouard G. Stanley, Qingfeng Chen, Shyam Prabhakar, Irving L. Weissman, Bing Lim Cell Stem Cell
31 Oct 2013 BMRC Institute of Molecular and Cell Biology Genome Wide Analysis Reveals Zic3 Interaction with Distal Regulatory Elements of Stage Specific Developmental Genes in Zebrafish Cecilia L. Winata, Igor Kondrychyn, Vibhor Kumar, Kandhadayar G. Srinivasan, Yuriy Orlov, Ashwini Ravishankar, Shyam Prabhakar, Lawrence W. Stanton, Vladimir Korzh, Sinnakaruppan Mathavan, Andrew S. McCallion PLoS Genetics